Rule - based Extraction of Experimental Evidence in the Biomedical Domain – the KDD Cup 2002 ( Task 1 )

نویسندگان

  • Yizhar Regev
  • Michal Finkelstein-Landau
  • Ronen Feldman
چکیده

Below we describe the winning system that we built for the KDD Cup 2002 Task 1 competition. Our system is a Rule-based Information Extraction (IE) system. It combines pattern matching, Natural Language Processing (NLP) tools, semantic constraints based on the domain and the specific task, and a post-processing stage for making the final curation decision based on the various evidence (positive and negative) found within the document. Development and implementation were made using the DIAL IE language and the ClearLab development environment. The results achieved were significantly superior than those achieved using categorization approaches.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

A Machine Learning Approach for the Curation of Biomedical Literature

In the field of the biomedical sciences there exists a vast repository of information located within large quantities of research papers. Very often, researchers need to spend considerable amounts of time reading through entire papers before being able to determine whether or not they should be curated (archived). In this paper, we present an automated text classification system for the classif...

متن کامل

Integrating image data into biomedical text categorization

Categorization of biomedical articles is a central task for supporting various curation efforts. It can also form the basis for effective biomedical text mining. Automatic text classification in the biomedical domain is thus an active research area. Contests organized by the KDD Cup (2002) and the TREC Genomics track (since 2003) defined several annotation tasks that involved document classific...

متن کامل

Biomedical Document Triage Based on Figure Classification

The annotation task in model organism databases is to assign attributes, such as Gene Ontology (GO) codes, to biological entities, such as genes and proteins based on the evidence found in documents or other resources. Document triage precedes an annotation task; it identifies relevant documents that can support the annotation process. Annotation in organism databases involves manual efforts of...

متن کامل

Extraction of Drug-Drug Interaction from Literature through Detecting Linguistic-based Negation and Clause Dependency

Extracting biomedical relations such as drug-drug interaction (DDI) from text is an important task in biomedical NLP. Due to the large number of complex sentences in biomedical literature, researchers have employed some sentence simplification techniques to improve the performance of the relation extraction methods. However, due to difficulty of the task, there is no noteworthy improvement in t...

متن کامل

Complaint and Diagnosis Extraction System Utilizing Rule-based Term Extraction System

In our laboratory, we have been developing a rule-based term extraction system in biomedical domain that contains hand-coded terms and domain specific suffixes, thus we construct a complaint and diagnosis extraction system utilizing the term extraction system. Since the rule-based system was constructed according to the annotated newspaper corpus [3], it must be inappropriate to direct applicat...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2002